SNP Profiles matching AMAZ3/2 [CHA]

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_Input profile	CC	AG	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CT	AA
1._AMAZ_3_/2	CC	_	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
2._GC-03-022-2-11	CC	_	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
3._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
4._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
5._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
6._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
7._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
8._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
9._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
10._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
11._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
12._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
13._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
14._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
15._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
16._AMAZ_3_/2	CC	AA	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA
17._AMAZ_3_/2	CC	AA	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA
18._AMAZ_3_/2	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
19._GC-03-022-2-11	CC	AA	CC	TT	TT	AA	TT	TT	CT	CC	AA	GG	CC	AA
20._GC-03-022-2-11	CC	AA	CC	TT	TT	_	TT	TT	CT	CC	AA	GG	CC	AA
21._GC-03-022-2-11	CC	AA	CC	TT	_	AA	TT	TT	CT	CC	AA	GG	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	CC	GG	CC	CC
1._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
2._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
3._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	CC	GG	CC	CC
4._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
5._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
6._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
7._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
8._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
9._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
10._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
11._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
12._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
13._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
14._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
15._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
16._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
17._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
18._AMAZ_3_/2	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
19._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
20._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC
21._GC-03-022-2-11	CT	AT	GG	CT	CC	CG	GT	AA	CC	AA	_	GG	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
1._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
2._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
3._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
4._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
5._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
6._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
7._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
8._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
9._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
10._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
11._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
12._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
13._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
14._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
15._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
16._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
17._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
18._AMAZ_3_/2	AA	GG	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X
19._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	_	GT	AA	AT	GG	X_X	X_X
20._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X
21._GC-03-022-2-11	AA	GG	AT	TT	AA	GG	AA	CC	GT	AA	AT	GG	X_X	X_X

Input profile: AMAZ_3_/2 RUQ_91

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._AMAZ_3_/2

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 16

Dapeng Zhang, 2016

2._AMAZ_3_/2 GC-03-022-2-11

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

3._AMAZ_3_/2

97.5 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P97 225

Dapeng Zhang, 2016

4._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 5 > FP

Dapeng Zhang, 2016

5._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 14 > F

Dapeng Zhang, 2016

6._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 1 > FP

Dapeng Zhang, 2016

7._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 15

Dapeng Zhang, 2016

8._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 13

Dapeng Zhang, 2016

9._AMAZ_3_/2

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 12

Dapeng Zhang, 2016

10._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

11._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

12._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

13._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

14._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP2

15._AMAZ_3_/2 GC-03-022-2-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

16._AMAZ_3_/2

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 9

Dapeng Zhang, 2016

17._AMAZ_3_/2

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

18._AMAZ_3_/2

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3211 7

Dapeng Zhang, 2016

19._AMAZ_3_/2 GC-03-022-2-11

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

20._AMAZ_3_/2 GC-03-022-2-11

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

21._AMAZ_3_/2 GC-03-022-2-11

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25